Laboratory for Computational Neuroscience
Publications Updated List on Google Scholar

Journal Articles
  * Beth Jelfs and Rosa H. M. Chan "Directionality Indices: Testing Information Transfer with Surrogate Correction," Physical Review E, accepted.

  * Song Xu, Yang Li, Tingwen Huang and Rosa H. M. Chan "A Sparse Multiwavelet-Based Generalized Laguerre-Volterra Model for Identifying Time-Varying Neural Dynamics from Spiking Activities," Entropy, 19(8):425, 2017.

  * Xiaolong Zhai, Beth Jelfs, Rosa H. M. Chan and Chung Tin "Self-Recalibrating Surface EMG Pattern Recognition for Neuroprosthesis Control based on Convolutional Neural Network," Frontiers in Neuroscience, 11:379, 2017.

  * Winnie K. Y. So, Savio W. H. Wong, Joseph N. Mak, and Rosa H. M. Chan "An Evaluation of Mental Workload with Frontal EEG," PLoS ONE, 12(4): e0174949, 2017.

  * Song Xu, Yang Li, Qi Guo, Xiao-Feng Yang, Rosa H. M. Chan "Identification of time-varying neural dynamics from spike train data using multiwavelet basis functions," Journal of Neuroscience Methods, vol. 278, pp. 46-56, 2017.

  * Bing Cao, Jun Wang, Mahadi Shahed, Beth Jelfs, Rosa H. M. Chan, and Ying Li "Vagus Nerve Stimulation Alters Phase Synchrony of the Anterior Cingulate Cortex and Facilitates Decision Making in Rats," Scientific Reports, 6:35135, 2016.

  * Bing Cao, Jun Wang, Xu Zhang, Xiangwei Yang, David Chun-Hei Poon, Beth Jelfs, Rosa H. M. Chan, Justin Che-Yuen Wu, and Ying Li "Impairment of Decision Making and Disruption of Synchrony between Basolateral Amygdala and Anterior Cingulate Cortex in the Maternally Separated Rat," Neurobiology of Learning and Memory, vol.136, pp. 74-85, 2016.

  * Yang Li, Qing Liu, Si-Rui Tan, and Rosa H. M. Chan "High-resolution time-frequency analysis of EEG using multiscale radial basis functions," Neurocomputing, vol. 195, pp. 96-103, 2016.

  * Qi She, Guanrong Chen, and Rosa H. M. Chan "Evaluating the Small-World-Ness of a Sampled Network: Functional Connectivity of Entorhinal-Hippocampal Circuitry," Scientific Reports, 6: 21468, 2016.

  * Yuan Gao, Gaonan Zhang, Beth Jelfs, Robert Carmer, Prahatha Venkatraman, Mohammad Ghadami, Skye A. Brown, Chi-Pui Pang, Yuk Fai Leung, Rosa H. M. Chan, and Mingzhi Zhang "Computational classification of different wild-type zebrafish strains based on their variation in light-induced locomotor response," Computers in Biology and Medicine, vol. 69, pp.1-9, 2016.

  * Yimin Chen, Wu Qiu, Jessica Kishimoto, Yuan Gao, Rosa Chan, Sandrine de Ribaupierre, Aaron Fenster, and Bernard Chiu "A framework for quantification and visualization of segmentation accuracy and variability in 3D lateral ventricle ultrasound images of preterm neonates," Medical Physics, vol. 42, no. 11, pp.6387-6405, 2015.

  * Min Wei, Tommy W. S. Chow, and Rosa H. M. Chan "Heterogeneous feature subset selection using mutual information-based feature transformation," Neurocomputing, vol. 168, pp.706-718, 2015.

  * J. Wang, B. Cao, T. Yua, B. Jelfs, J. Yan, R.H.M. Chan, and Y. Li "Theta-frequency phase-locking of single anterior cingulate cortex neurons and synchronization with the medial thalamus are modulated by visceral noxious stimulation in rats," Neuroscience, vol. 298, pp.200-210, 2015.

  * Li Mu, Jun Wang, Bing Cao, Beth Jelfs, Rosa H. M. Chan, Xiaoxiang Xu, Mahadi Hasan, Xu Zhang and Ying Li "Impairment of cognitive function by chemotherapy: association with the disruption of phase-locking and synchronization in anterior cingulate cortex," Molecular Brain, 8:32, 2015.

  * Dong Song, Rosa H. M. Chan, Brian S. Robinson, Vasilis Z. Marmarelis, ioan Opris, Robert E. Hampson, Sam A. Deadwyler, and Theodore W. Berger "Identification of functional synaptic plasticity from spiking activities using nonlinear dynamical modeling," Journal of Neuroscience Methods, vol. 244, pp. 123-135, 2015.

  * Min Wei, Tommy W. S. Chow, and Rosa H. M. Chan "Clustering Heterogeneous Data with k-Means by Mutual Information-Based Unsupervised Feature Transformation," Entropy, 17(3), pp. 1535-1548, 2015.

  * Yuan Gao, Guanrong Chen, Rosa H. M. Chan "Naming Game on Networks: Let Everyone be Both Speaker and Hearer," Scientific Reports, 4 : 6149, 2014.

  * Yuan Gao, Rosa H. M. Chan, Tommy W. S. Chow, Liyun Zhang, Sylvia Bonilla, Chi-Pui Pang, Mingzhi Zhang, and Yuk Fai Leung "A High-Throughput Zebrafish Screening Method for Visual Mutants by Light-Induced Locomotor Response" IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 11, no. 4, pp. 693-701, 2014.

  * Mingbo Zhao, Rosa H. M. Chan, Tommy W. S. Chow, Peng Tang "Compact Graph based Semi-Supervised Learning for Medical Diagnosis in Alzheimer's Disease," IEEE Signal Processing Letters, vol. 21, no. 10, pp. 1192-1196, 2014

  * Yao Xin, Will X. Y. Li, Ray C. C. Cheung, Rosa H. M. Chan, Hong Yan, Dong Song, Theodore W Berger "An FPGA based scalable architecture of a stochastic state point process filter (SSPPF) to track the nonlinear dynamics underlying neural spiking," Microelectronics Journal, vol. 45, no. 6, pp 690-701, 2014.

  * Savio W. H. Wong, Rosa H. M. Chan, Joseph N Mak "Spectral Modulation of Frontal EEG During Motor Skill Acquisition: A Mobile EEG Study," International Journal of Psychophysiology, vol. 91, no.1, pp. 16-21, 2014.

  * Sam A Deadwyler, Robert E Hampson, Andrew Sweat, Dong Song, Rosa H. M. Chan, Ioan Opris, Greg A Gerhardt, Vasilis Z. Marmarelis and Theodore W Berger "Donor/Recipient Enhancement of Memory in Rat Hippocampus," Frontiers in Systems Neuroscience, 7:120, 2013.

  * Will X. Y. Li, Ray C. C. Cheung, Rosa H. M. Chan, Dong Song, and Theodore W. Berger "Real-Time Prediction of Neuronal Population Spiking Activity Using FPGA," IEEE Transactions on Biomedical Circuits and Systems, vol. 7, no. 4, pp 489-498, 2013.

  * Mingbo Zhao, Rosa H. M. Chan, Peng Tang, Tommy W. S. Chow, and Savio W. H. Wong "Trace Ratio Linear Discriminant Analysis for Medical Diagnosis: A Case Study of Dementia," IEEE Signal Processing Letters, vol. 20, no. 5, pp. 431-434, 2013.

  * Bo Yu, Rosa H. M. Chan, Terrence Mak, Yihe Sun, and Chi-Sang Poon "On-Chip Systolic Networks for Real-Time Tracking of Pairwise Correlations between Neurons in a Large-Scale Network," IEEE Transactions on Biomedical Engineering, vol. 60, iss. 1, pp. 198-202, 2013.

  * Robert E. Hampson, Dong Song, Rosa H. M. Chan, Andrew J. Sweatt, Mitchell R. Riley, Anushka V. Goonawardena, Vasilis Z. Marmarelis, Greg A. Gerhardt, Theodore W. Berger, and Sam A. Deadwyler "Closing the Loop for Memory Prostheses: Detecting the Role of Hippocampal Neural Ensembles Using Nonlinear Models," IEEE Transactions on Neural Systems and Rehabilitation Engineering, vol. 20, no. 4, pp. 510-525, 2012.

  * Theodore W. Berger, Dong Song, Rosa H. M. Chan, Vasilis Z. Marmarelis, Jeff LaCoss, Jack Wills, Robert E. Hampson, Sam A. Deadwyler, and John J. Granacki "A Hippocampal Cognitive Prosthesis: Multi-Input, Multi-Output Nonlinear Modeling and VLSI Implementation," IEEE Transactions on Neural Systems and Rehabilitation Engineering, vol. 20, no. 2, pp. 198-211, 2012.

  * Robert E. Hampson, Dong Song, Rosa H. M. Chan, Andrew J. Sweatt, Mitchell R. Riley, Gregory A. Gerhardt, Dae C. Shin, Vasilis Z. Marmarelis, Theodore W. Berger, and Samuel A. Deadwyler "A Nonlinear Model for Hippocampal Cognitive Prosthesis: Memory Facilitation by Hippocampal Ensemble Stimulation," IEEE Transactions on Neural Systems and Rehabilitation Engineering, vol. 20, no. 2, pp. 184-197, 2012.
(Received the Outstanding Paper Award from IEEE Transactions on Neural Systems and Rehabilitation Engineering in 2013)


  * Will X. Y. Li, Rosa H. M. Chan, Wei Zhang, Ray C. C. Cheung, Dong Song, Theodore W. Berger "High-Performance and Scalable System Architecture for the Real-Time Estimation of Generalized Laguerre-Volterra MIMO Model from Neural Population Spiking Activity," IEEE Journal on Emerging and Selected Topics in Circuits and Systems (JETCAS), pp. 489-501, 2011.

  * Robert E. Hampson, Andrew J. Sweatt, Anushka V. Goonawardena, Dong Song, Rosa H. M. Chan, Theodore W. Berger, and Sam A. Deadwyler "Memory Encoding in Hippocampal Ensembles is Negatively Encoded by Cannabinoid CB1 Receptors," Behavioural Pharmacology, vol. 22, iss. 4, pp. 335-346, 2011.

  * Theodore W. Berger, Dong Song, Rosa H. M. Chan, and Vasilis Z. Marmarelis "The Neurobiological Basis of Cognition: Identification by Multi-Input, Multi-Output Nonlinear Dynamic Modeling," Proceedings of the IEEE, vol. 98, iss. 3, pp. 356-374, 2010.

  * Dong Song, Rosa H. M. Chan, Vasilis Z. Marmarelis, Robert E. Hampson, Sam A. Deadwyler, and Theodore W. Berger "Nonlinear Modeling of Neural Population Dynamics for Hippocampal Prosthesis," Neural Networks, vol. 22, pp. 1340-1351, 2009.

  * Dong Song, Rosa H. M. Chan, Vasilis Z. Marmarelis, Robert E. Hampson, Sam A. Deadwyler, and Theodore W. Berger "Nonlinear Dynamic Modeling of Spike Train Transformations for Hippocampal-Cortical Prostheses," IEEE Transactions on Biomedical Engineering, vol. 54, no. 6, Part 1, pp. 1053-1066, 2007.

  * Rosa H. M. Chan, Carmen K. M. Fung, and Wen J. Li "Rapid Assembly of Carbon Nanotubes for Nanosensing by Dielectrophoretic Force," Nanotechnology, vol. 15, iss. 10, pp. S672-S677(1), 2004.

  * Carmen K. M. Fung, Victor T. S. Wong, Rosa H. M. Chan and Wen J. Li "Dielectrophoretic Batch Fabrication of Bundled Carbon Nanotube Thermal Sensors," IEEE Transactions on Nanotechnology, vol. 3, no. 3, pp. 395-403, 2004.

 

Book Chapter
  1. Rosa H. M. Chan, Terrence Mak, and Chung Tin "Computational Models and Hardware Implementations for Real-Time Neuron-Machine Interactions" Zhi Yang (ed.), Neural Computation, Neural Devices, and Neural Prosthesis, pp. 289-311, Springer, 2014.

  2. Will X. Y. Li, Rosa H. M. Chan, Wei Zhang, Chiwai Yu, Dong Song, Theodore W. Berger, and Ray C. C. Cheung "High-Performance Computing for Neuroinformatics using FPGA" Wim Vanderbauwhede and Khaled Benkrid (eds.), High-Performance Computing using FPGAs, pp. 177-207, Springer, 2013.

  3. Robert E. Hampson, John D. Simeral, Theodore W. Berger, Dong Song, Rosa H. M. Chan, Vasilis Z. Marmarelis and Sam A. Deadwyler "Cognitively Relevant Recoding in Hippocampus: Beneficial Feedback of Ensemble Codes in a Closed Loop Paradigm" Robert P. Vertes and Robert W Stackman Jr. (eds.), Electrophysiological Recording Techniques, Neuromethods, vol. 54, pp. 215-239, Springer, 2011.

 

Selected Conference Publications
  1. Beth Jelfs, Shengli Zhou, Bernard K. Y. Wong, Chung Tin, and Rosa H. M. Chan "Recruitment of Small Synergistic Movement Makes a Good Pianist," Proceedings of Annual International Conference of the IEEE EMBS, pp 242-245, 2015.

  2. Qi She, Ka Yan So, and Rosa H. M. Chan "Reconstruction of Neural Network Topology Using Spike Train Data: Small-World Features of Hippocampal Network," Proceedings of Annual International Conference of the IEEE EMBS, pp 2506-2509, 2015.

  3. Dong Song, Brian Robinson, Rosa H. M. Chan, Vasilis Marmarelis, Robert Hampson, Sam Deadwyler, and Theodore W. Berger "Identification of Functional Synaptic Plasticity from Ensemble Spiking Activities: A Nonlinear Dynamical Modeling Approach," Proceedings of 6th International IEEE EMBS Conference on Neural Engineering, pp 617-620, 2013.

  4. Joseph N. Mak, Rosa H. M. Chan, Savio W. H. Wong "Spectral Modulation of Frontal EEG Activities During Motor Skill Acquisition: Task Familiarity Monitoring Using Single-Channel EEG," Proceedings of Annual International Conference of the IEEE EMBS, pp 5638-5641, 2013.

  5. Dong Song, Ioan Opris, Rosa H. M. Chan, Vasilis Z. Marmarelis, Robert E. Hampson, Sam A. Deadwyler, Theodore W. Berger "Functional connectivity between Layer 2/3 and Layer 5 neurons in prefrontal cortex of nonhuman primates during a delayed match-to-sample task," Proceedings of Annual International Conference of the IEEE EMBS, pp 2555-2558, 2012.

  6. Will X. Y. Li, Rosa H. M. Chan, Dong Song, Theodore W. Berger, and Ray C. C. Cheung "A dual mode FPGA design for the hippocampal prosthesis," Proceedings of Annual International Conference of the IEEE EMBS, pp 4579-4582, 2012.

  7. Rosa H. M. Chan, Dong Song, Anushka V. Goonawardena, Sarah Bough, John Sesay, Robert E. Hampson, Sam A. Deadwyler, and Theodore W. Berger "Tracking the Changes of Hippocampal Population Nonlinear Dynamics in Rats Learning a Memory-Dependent Task," Proceedings of 33rd Annual International Conference of the IEEE EMBS, pp 3326-3329, 2011.

  8. Dong Song, Rosa H. M. Chan, Vasilis Z. Marmarelis, Robert E. Hampson, Sam A. Deadwyler, and Theodore W. Berger "Estimation and Statistical Validation of Event-Invariant Nonlinear Dynamic Models of Hippocampal CA3-CA1 Population Activities," Proceedings of 33rd Annual International Conference of the IEEE EMBS, pp. 3330-3333, 2011.

  9. Will X. Y Li, Rosa H. M. Chan, Wei Zhang, Ray C. C. Cheung, Dong Song, and Theodore W. Berger "A Hardware-based Computational Platform for Generalized Laguerre-Volterra MIMO Model for Neural Activities," Proceedings of 33rd Annual International Conference of the IEEE EMBS, pp. 7282-7285, 2011.

  10. Robert E. Hampson, Vasilis Z. Marmarelis, Dae Shin, Greg A. Gerhardt, Dong Song, Rosa H. M. Chan, Andrew Sweatt, John Granacki, Theodore W. Berger, and Sam A. Deadwyler "Restorative Encoding Memory Integrative Neural Device: 'REMIND," Proceedings of 33rd Annual International Conference of the IEEE EMBS, pp. 3338-3341, 2011.

  11. Will X. Y. Li, Rosa H. M. Chan, Wei Zhang, Ray C.C. Cheung, Dong Song and Theodore W. Berger "FPGA Architecture of Generalized Laguerre-Volterra MIMO Model for Neural Population Spiking Activities," 21st International Conference on Field Programmable Logic and Applications (FPL), pp. 44-49, 2011.

  12. Rosa H. M. Chan, Dong Song, Anushka V. Goonawardena, Sarah Bough, John Sesay, Robert E. Hampson, Sam A. Deadwyler, and Theodore W. Berger "Changes of Hippocampal CA3-CA1 Population Nonlinear Dynamics across Different Training Sessions in Rats Performing a Memory-Dependent Task," Proceedings of 32nd Annual International Conference of the IEEE EMBS, pp. 5464-5467, 2010.

  13. Rosa H. M. Chan, Dong Song, and Theodore W. Berger "Nonstationary Nonlinear Dynamic Modeling of Hippocampus," Proceedings of the 31st Annual International Conference of the IEEE EMBS, pp. 4559-4562, 2009.

  14. Dong Song, Rosa H. M. Chan, Vasilis Z. Marmarelis, Robert E. Hampson, Sam A. Deadwyler, and Theodore W. Berger "Sparse Generalized Laguerre-Volterra Model of Neural Population Dynamics," Proceedings of the 31st Annual International Conference of the IEEE EMBS, pp. 4555-4558, 2009.

  15. Rosa H. M. Chan, Dong Song, and Theodore W. Berger "Tracking Temporal Evolution of Nonlinear Dynamics in Hippocampus Using Time-Varying Volterra Kernels," Proceedings of the 30th Annual International Conference of the IEEE EMBS, pp. 4996-4999, 2008.

  16. Dong Song, Rosa H. M. Chan, Vasilis Z. Marmarelis, Robert E. Hampson, Sam A. Deadwyler, and Theodore W. Berger "Statistical Selection of Multiple-Input Multiple-Output Nonlinear Dynamic Models of Spike Train Transformation," Proceedings of the 29th Annual International Conference of the IEEE EMBS, pp. 4727-4730, 2007.

  17. Dong Song, Rosa H. M. Chan, Vasilis Z. Marmarelis, Robert E. Hampson, Sam A. Deadwyler, and Theodore W. Berger "Physiologically Plausible Stochastic Nonlinear Kernel Models of Spike Train to Spike Train Transformation," Proceedings of the 28th Annual International Conference of the IEEE EMBS, pp. 6129-6132, 2006.

  18. Carmen K. M. Fung, Maggie Zhang, Rosa H. M. Chan, and Wen J. Li "A PMMA-based Micro Pressure Sensor Chip Using Carbon Nanotubes as Sensing Elements," Proceedings of IEEE MEMS 2005, pp. 251-254, 2005.

  19. Guangyong Li, Ning Xi, Ali Saeed, Heping Chen, Jiangbo Zhang, Wen J. Li, Carmen K. M. Fung, Rosa H. M. Chan, Mingjun Zhang and Tzyh-Jong Tarn "Experimental Studies of DNA Electrical Properties Using AFM Based Nano-Manipulator," Proceedings of the 4th IEEE Conference on Nanotechnology, pp. 308-310, August 2004.

  20. Guangyong Li, Ning Xi, Heping Chen, Ali Saeed, Wen J. Li, Carmen K. M. Fung, Rosa H. M. Chan, Mingjun Zhang, Tzyh-Jong Tarn "Nano-Assembly of DNA Based Electronic Devices Using Atomic Force Microscopy," Proceedings of IEEE/RSJ IROS 2004, pp. 583-588, 2004.

  21. Selina C. Qu, Carmen K. M. Fung, Rosa H. M. Chan and Wen J. Li "Development of an Automated Microinjection System for Fabrication of Carbon Nanotube Sensors," Proceedings of 5th World Congress on Intelligent Control and Automation, vol. 6, pp. 5613-5618, 2004.